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Node Dynamics

All nodes stay in place

Reactions stay in place


Metabolites stay in place



All nodes are free
You should use the Automatic placement layout while setting global options of layout

Global layout


Gravity
Charge
Desired arc length

Arc orientation





Filter

Show Cofactors
Filter out reactions with small value:
off.

Selection

Click on any node to select it.
Hold Ctrl key for multiple selection








0 metabolite(s) selected
0 reaction(s) selected

Groups


Path Search

Start (click on a node to set it as starting point)

End (click on a node to set it as end point)

Node Search

Search for a metabolite or reaction by name or id:

Snapshots

Download this view as svg
Can be used as a still image
Download this view as json
Can be uploaded again on Dinghy

Metabolic Pathways

Miscellaneous

Node scale

Compartment Separation



Node Labels



Name
Id
ShortName
Compartment
Trim Ids and ShortNames:


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Local data
Local data